The T2T-NIP(AGIS1.0) provides complete sequences of a gapless telomere-to-telomere assembly, T2T-NIP, for the rice reference genome (Oryza sativa ssp. japonica cv. Nipponbare) and functional element annotation of the 12 complete rice chromosomes. Large improvements have been made in this T2T-NIP which resolves the remaining 3% unknown genomic regions in IRGSP-1.0. These data are available through search pages and our Genome Browser that provides an integrated display of annotation data.

There are three main functions included here:

Citation:

Shang L., He W., Wang T., Yang Y., Xu Q., Zhao X., Yang L., Zhang H., Li X., Lv Y., Chen W., Cao S., Wang X., Zhang B., Liu X., Yu X., He H., Wei H., Leng Y., Shi C., Guo M., Zhang Z., Zhang B., Yuan Q., Qian H., Cao X., Cui Y., Zhang Q., Dai X., Liu C., Guo L., Zhou Y., Zheng X., Ruan J., Cheng Z., Pan W., and Qian Q. (2023). A complete assembly of the rice Nipponbare reference genome. Mol. Plant. doi: https://doi.org/10.1016/j.molp.2023.08.003